Pipeline used to generate variant effect predictions for all possible SARS-CoV-2 substitutions

Program Pandemic-simulator provides visualization of a simple model of the virus(e.g. COVID-19) spreading during a pandemic. The model can be customized by different parameters such as spread distance, spread chance, mortality, recovering time, population size, and area size, also some parts of the population can be to lock down or separate from…

COVID geospatial project for obstetrics & gynecology.

Coronavirus SARS-CoV-2 caused disease COVID-19 dashboard

University project "SARS-CoV-2 in Croatia" in Python.

Statistical analysis of Touret's in vitro screening for molecules inhibiting SARS-CoV-2 infection. Illustration: AvH. (2020). Covid-19 cracked (http://doi.org/10.5281/zenodo.3734643).

To create awareness of the worldwide spread CORONA virus.

INSACOG DataHub is a part of INSACOG that is used to store and analyze SARS-CoV-2 genomic data. This repository is developed and maintained at National Institute of Biomedical Genomics.

Tools to support the Open Data Model (ODM) for Wastewater Based Surveillance of SARS-CoV-2. See also https://github.com/Big-Life-Lab/ODM

A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.

Dashboard to browse analyses created by UnCoVar.

Die COVID-19-Impfung kann einen Wendepunkt in der Kontrolle der COVID-19-Pandemie darstellen und erfährt daher hohes Maß an öffentlicher Aufmerksamkeit. Einführung und Umsetzung der COVID-19-Impfung gehen mit besonderen Herausforderungen einher, die bei der Impfdatenerfassung zu berücksichtigen sind. In diesem Kontext ist es Ziel des Projekts 'D…

Developed as part of the Lawrence Livermore National Laboratory Data Science Summer Institute 2022 Challenge Problem. Screening molecular inhibitors for SARS-CoV-2 protein targets with Deep Learning Models.

Modelling Course

SARS is a satirical vignette style video game utilizing ANSI-art for sprites, see https://sars.pengaru.com. Github is only a mirror.

A simple program that uses parallel processing to detect deletions in fasta files relative to a reference genome.

Independent bioinformatics project on the origin of SARS-CoV-2 utilizing the Levenshtein distance algorithm. Uses real-world genome data of various animal coronaviruses as points of comparison.

An unsupervised machine learning pipeline for discriminating major SARS-CoV-2 variants in the Philippines. Side goals: benchmark the performance of bioinformatics workflows, especially the one produced by this project, according to the status of Spectre/Meltdown patches and the choice of linear algebra libraries.

A collection of simple epidemiological models with applications to COVID-19.