A Consensus Docking Plugin for PyMOL
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Updated
Jun 10, 2024 - Python
A Consensus Docking Plugin for PyMOL
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
The pymolsnips rewritten in Python. This Python enables direct interaction with the pymol api from other Python environments like electronic notebooks (e.g. Jupyter Notebooks), IDEs, and literate programming documents (e.g., Rmarkdown, org-mode ).
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
Landing page for MooersLab repository
Script to facilitate the making of horizontal scripts
Slideshow to talk in August 2022 at 72nd Annual Meeting of the American Crystallographic Association
AR.js based augmented reality application with a model directly from Pymol
Pymol-open-source wheels for Python on Windows
Rapid generation of high-quality structure figures for publication with PyMOL-PUB
PyMOL snippet library is written in Python for use in RStudio via the R reticulate package and the PyMOL Python API.
PyMOL Python Script Writing with Code Templates in Jupyter notebooks with JupyterLab using the Elyra extension
Supports the use of PyMOL in literate programming in org-mode, which is best run in Emacs.
Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
Code snippets for colab-notebooks running open-source PyMOL
Library of PyMOL Python snippets for Google Colab.
Protocol for making large scale images to be framed or for background images of posters.
👋 Webserver & command-line tool for search of APO (unbound) protein structures from HOLO (bound) forms and vice versa. http://apoholo.cz
Blaine's pymolrc file, the configuration file for the molecular graphics program.
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