P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
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Updated
Apr 12, 2024 - Groovy
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
3D hotspot mutation proximity analysis tool
PyMOL extension to color AlphaFold structures by confidence (pLDDT).
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
Script to facilitate the making of horizontal scripts
A Consensus Docking Plugin for PyMOL
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A PyMOL plugin for visualizing vibrations in molecules and solids
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A PyMOL plugin for construction, visualization and analysis of glycan molecules. https://www.ncbi.nlm.nih.gov/pubmed/27549814
Pymolsnips is a library of PyMOL scripting language code fragments for several popular text editors.
Python code to color a PDB structure based on parameters from a multiple sequence alignment
This is the public repository for the RING PyMOL plugin developed by the BioComputing UP laboratory at the University of Padua
A program analyzing 3D protein structures from PDB to generate 2D binding motifs
AR.js based augmented reality application with a model directly from Pymol
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