Toolbox for molecular animations in Blender, powered by Geometry Nodes.
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Updated
Jun 2, 2024 - Python
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Voronota is a software tool for analyzing three-dimensional structures of biological macromolecules using the Voronoi diagram of atomic balls.
A nano protein structure prediction model based on DeepMind's AlphaFold paper
Official git repository for Biopython (originally converted from CVS)
SaprotHub: Making Protein Modeling Accessible to All Biologists
Saprot: Protein Language Model with Structural Alphabet
DiffModeler: a diffusion model based protein complex structure modeling tool.
protein conformational spaces meet machine learning
The Integrative Modeling Platform
Mutual Information Tools for protein Sequence analysis in Julia
A Julia package to read, write and manipulate macromolecular structures
Cython bindings and Python interface to Jess, a 3D template matching software for protein structures.
Predicting Antibody and ACE2 Affinity for SARS-CoV-2 BA.2.86 with In Silico Protein Modeling and Docking
The Rosetta Bio-macromolecule modeling package.
An open-source platform for developing protein models beyond AlphaFold.
Protein Graph Library
A Python API for the RCSB Protein Data Bank (PDB)
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN.
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
macromolecular crystallography library and utilities
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