Download and index Ensembl sequences and annotations
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Updated
Jun 10, 2024 - Python
Download and index Ensembl sequences and annotations
The Ensembl Compara Perl API and SQL schema
R package providing query functionality to BioMart instances like Ensembl
Provided tool will add explicit 3'UTR and extends it into a valid Ensembl GTF file. It's useful for 3'RNAseq when 3' coordinates might not be as good as you expect.
Python tools for proteogenomics analysis toolkit
Package allowing easy integration of Ensembl querying with your R workflow
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
The most awful genbank file you'll ever need to parse.
This is the ensembldb development repository.
Efficient querying of biological databases
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Get the latest gene-transcript identifiers using Ensembl, RefSeq, MANE and LRGs models.
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