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[Merge] "non-atopic asthma" with "intrinsic asthma"? #7691

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Tracked by #7685
matentzn opened this issue May 7, 2024 · 5 comments
Open
Tracked by #7685

[Merge] "non-atopic asthma" with "intrinsic asthma"? #7691

matentzn opened this issue May 7, 2024 · 5 comments
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merge on list Added to the obosletion or merge candidate list.

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@matentzn
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matentzn commented May 7, 2024

I stumbled across this in #7685. The two classes have the same exact synonym after fixing the typos.

Mondo term (ID and Label)

[Term]
id: MONDO:0800112
name: non-atopic asthma
def: "A type of asthma that isn't related to an allergy trigger like pollen or dust, and is less common than atopic asthma." [PMID:23724224]
synonym: "intrinsic asthma" EXACT [https://orcid.org/0000-0002-7371-8158, https://orcid.org/0000-0003-0113-912X]
synonym: "non-allergic asthma" EXACT [https://orcid.org/0000-0002-7371-8158, https://orcid.org/0000-0003-0113-912X]
is_a: MONDO:0004979 {source="https://orcid.org/0000-0002-7371-8158", source="https://orcid.org/0000-0003-0113-912X"} ! asthma
property_value: IAO:0000233 "https://github.com/monarch-initiative/mondo/issues/5261" xsd:anyURI
[Term]
id: MONDO:0004765
name: intrinsic asthma
def: "An asthma that is triggered by factors not related to allergies such as anxiety, stress, exercise, cold air, dry air, hyperventilation, smoke, viruses, chemical irritants, autonomic imbalance, hormonal deficiencies and psychogenic influences. It is characterized by airway obstruction and inflammation that is at least partially reversible with medication. The symptoms include coughing, wheezing, shortness of breath or rapid breathing, and chest tightness." [DOID:9360, http://www.aafa.org/display.cfm?id=8&sub=17, http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1532783/pdf/califmed00272-0002b.pdf]
xref: DOID:9360 {source="MONDO:equivalentTo"}
xref: ICD10CM:J45 {source="DOID:9360"}
xref: ICD9:493.1 {source="DOID:9360"}
xref: SCTID:155576005 {source="DOID:9360"}
xref: SCTID:195973000 {source="DOID:9360"}
xref: SCTID:195976008 {source="DOID:9360"}
xref: SCTID:266361008 {source="DOID:9360", source="MONDO:equivalentTo"}
xref: SCTID:266397004 {source="DOID:9360"}
xref: SCTID:8312004 {source="DOID:9360"}
xref: UMLS:C0155880 {source="DOID:9360", source="MONDO:equivalentTo"}
is_a: MONDO:0004979 {source="DOID:9360"} ! asthma
disjoint_from: MONDO:0004784 ! allergic asthma
relationship: disease_has_feature HP:0000739 ! Anxiety
relationship: disease_has_feature HP:0002099 ! Asthma
relationship: disease_has_feature HP:0002883 ! Hyperventilation

Reason for deprecation

Non-atopic asthma and intrinsic asthma are generally considered to be the same. These terms describe a type of asthma that is not triggered by allergic reactions, which is distinct from atopic or extrinsic asthma that is typically triggered by allergens such as pollen, dust mites, or pet dander. --- ChatGPT

Term to be merged with

Your nano-attribution (ORCID)

https://orcid.org/0000-0002-7356-1779

@sabrinatoro
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This issue blocks this PR

@sabrinatoro
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I removed the "intrinsic asthma" synonym from MONDO:0800112 to resolve the QC fail until these terms are merged

sabrinatoro added a commit that referenced this issue May 10, 2024
Closes #7690
Closes #7692
Addresses #7691

These changes should unblock [this PR](#7685)

Closes #7670
@sabrinatoro sabrinatoro added the on list Added to the obosletion or merge candidate list. label May 14, 2024
sabrinatoro added a commit that referenced this issue May 14, 2024
Closes #7690
Closes #7692
Addresses #7691

These changes should unblock [this PR](#7685)

Closes #7670
@katiermullen
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Agree with the merging of MONDO:0800112 non-atopic asthma into MONDO:0004765 intrinsic asthma because they represent the same concept.

@nicolevasilevsky
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nicolevasilevsky commented May 29, 2024

@sabrinatoro this does not have an obsoletion tag, it needs to be tagged (I didn't check the list)

@nicolevasilevsky nicolevasilevsky removed the on list Added to the obosletion or merge candidate list. label May 29, 2024
@sabrinatoro sabrinatoro added the on list Added to the obosletion or merge candidate list. label May 30, 2024
@sabrinatoro
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Thank you. It is on the list (though there was not "on list" tag)

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